Task: Imaging Development
Description: Debian Med packages for medical image development
 This metapackage will install Debian packages which might be useful
 for developing applications for medical image processing.

Depends: ctn-dev, cimg-dev, libminc-dev, libmdc2-dev

Depends: libnifti-dev

Depends: libigstk4-dev

Suggests: igstk-examples

Depends: libinsighttoolkit3-dev

Suggests: insighttoolkit3-examples

Suggests: libnifti-doc

Suggests: libvtk5.4

Depends: libvolpack1-dev

Depends: libgdcm2-dev
Depends: python-gdcm

Suggests: python-libavg
Homepage: http://www.libavg.de
License: LGPL
Vcs-Svn: svn+ssh://svn.debian.org/svn/collab-maint/deb-maint/libavg/trunk
Vcs-Browser: http://svn.debian.org/wsvn/collab-maint/deb-maint/libavg/trunk/
Pkg-URL: http://snapshot.debian.org/archive/debian/20100503T045439Z/pool/main/liba/libavg/python-libavg_1.0.1-1_amd64.deb
Pkg-Description: Description: libavg Ain't Vector Graphics
 libavg is a high-level multimedia platform with a focus on interactive
 installations. It is meant to pick up where Macromedia Director leaves off and
 gives you high-quality hardware-accelerated visuals as well as easy and
 flexible authoring, testing and deployment. libavg integrates well with other
 open-source solutions for sound, networking and hardware device support,
 resulting in a complete and well-integrated package. It uses an xml-based
 layout language for screen design and Python as scripting language.
Remark: Homepage shows some potential medical applications
 The package was once part of Debian but is orphaned now.  Feel free to pick the
 latest snapshot from http://snapshot.debian.org/package/libavg/1.0.1-1/ or use
 the packaging in collab-maint for reintroducing.

Depends: python-mvpa
Why: Suggested by maintainer Michael Hanke <michael.hanke@gmail.com>

Depends: python-nipy

 ; Added by blends-inject 0.0.4. [Please note here if modified manually]
Depends: python-nipype
Published-Authors: SS Ghosh, C Burns, D Clark, K Gorgolewski, YO Halchenko, C Madison, R Tungaraza, KJ Millman
Published-In: 16th Annual Meeting of the Organization for Human Brain Mapping
Published-Title: Nipype: Opensource platform for unified and replicable interaction  with existing neuroimaging tools
Published-URL: https://github.com/satra/ohbm2010/raw/master/NIPYPE/POSTER/poster_nipype.pdf
Published-Year: 2010

Depends: python-nitime

Depends: libvia-dev

Depends: odin

Depends: libcv-dev

Depends: libvxl1-dev

Depends: libteem1-dev

Depends: gmic

Depends: libgiftiio-dev

Depends: libvista2-dev
Homepage: http://mia.sourceforge.net/
License: GPL
Pkg-Description: software environment for computer vision research
 Vista is a software environment for computer vision research. It is
 designed to support not only images, but also edge sets, camera models,
 and more complex  data structures. Vista includes libraries of common
 computer vision and image  processing algorithms. It is written in
 ANSI C, for UNIX platforms running X Windows, and it is freely available.
 The original development was done  at University of British Columbia
 (http://www.cs.ubc.ca/nest/lci/vista/vista.html).
 .
 Because the development was stalled by the original authors the
 development continued in the "Tools for Medical Image Analysis"
 framework (http://mia.sourceforge.net/) which is maintained by
 Max Planck Institute of Cognitive Neuroscience
 (http://www.cns.mpg.de/).
 .
 This is the development package.
Remark: With libvia-dev an alternative is already part of Debian.

Depends: libmni-perllib-perl
Homepage: http://packages.bic.mni.mcgill.ca/tgz/
License: Artistic License
Responsible: NeuroDebian Team <team@neuro.debian.net>
Pkg-URL: http://apsy.gse.uni-magdeburg.de/svn/fsl/libmni-perllib-perl/trunk/debian/
Pkg-Description: The MNI Perl Library
 Collection of various Perl module used by other MNI software
 packages.
Remark: There was some previous work on this software which is stalled currently
 Michael Hanke agreed to take over his stuff from mentors 
 http://mentors.debian.net/cgi-bin/sponsor-pkglist?action=details;package=libmni-perllib-perl
 to Debian Med svn and start group maintenance. 

Published-Authors: Alois Schlögl, Clemens Brunner
Published-DOI: 10.1109/MC.2008.407
Published-In: Computer, 41(10): 44-50
Published-Title: BioSig: A Free and Open Source Software Library for BCI Research
Published-URL: http://pub.ist.ac.at/~schloegl/publications/Schloegl2007_BCI_Software.pdf
Published-Year: 2008

Depends: libgiftiio-dev
License: Public domain
Pkg-URL: http://neuro.debian.net/pkgs/libgifti-dev.html


Depends: python-dicom
License: MIT
Pkg-URL: http://neuro.debian.net/pkgs/python-dicom.html

Depends: libopenmeeg-dev
Published-Authors: Alexandre Gramfort, Théodore Papadopoulo, Emmanuel Olivi, Maureen Clerc
Published-In: BioMedical Engineering OnLine 45:9
Published-Title: OpenMEEG: opensource software for quasistatic bioelectromagnetics
Published-URL: http://www.biomedical-engineering-online.com/content/9/1/45
Published-Year: 2010

Depends: python-nibabel

 ; Added by blends-inject 0.0.2. [now official package]
Depends: libgdf-dev

 ; Added by blends-inject 0.0.6. [Please note here if modified manually]
Suggests: emokit
Homepage: https://github.com/daeken/Emokit
Language: Python, C
License: BSD-3
Vcs-Browser: https://github.com/daeken/Emokit
Vcs-Git: git://github.com/daeken/Emokit.git
Pkg-Description: Emotiv EPOC headset Python interface
 Emotive is an interface to a budget Emotiv EPOC EEG headset.

 ; Added by blends-inject 0.0.7. [Please note here if modified manually]
Depends: pyxnat

Depends: python-dipy
Published-Authors: Garyfallidis E, Brett M, Tsiaras V, Vogiatzis G, Nimmo-Smith I
Published-In: Proc. Intl. Soc. Mag. Reson. Med. 18
Published-Title: Identification of corresponding tracks in diffusion MRI tractographies
Published-Year: 2010

 ; Added by blends-inject 0.0.7. [now official package]
Depends: libbiosig-dev
Published-Authors: Alois Schlögl, Clemens Brunner
Published-DOI: 10.1109/MC.2008.407
Published-In: Computer, 41(10): 44-50
Published-Title: BioSig: A Free and Open Source Software Library for BCI Research
Published-URL: http://pub.ist.ac.at/~schloegl/publications/Schloegl2007_BCI_Software.pdf
Published-Year: 2008

Depends: libactiviz.net5.6-cil
License: Free
Homepage: http://www.kitware.com/products/avdownload.php
Vcs-Svn: svn://svn.debian.org/svn/debian-science/packages/activiz.net/trunk
Vcs-Browser: http://svn.debian.org/viewsvn/debian-science/packages/activiz.net/trunk
Pkg-Description: Tool for generating C# wrappers around VTK
 ActiViz provides a powerful interface to the Visualization Toolkit (VTK), an
 object-oriented software system encompassing thousands of algorithms that
 transform data into interactive 3D environments. ActiViz, which generates C#
 wrappers around VTK, enables developers to combine the power of VTK with the
 many .NET framework objects for web and database access. Available as source
 code or as a pre-built WinForms Control, ActiViz .NET includes examples, online
 documentation, and supports IntelliSense in the .NET Framework

Depends: libctkcore0-dev
Homepage: http://commontk.org
License: Apache 2.0
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/commontk/trunk/
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/commontk/trunk/
WNPP: 617337
Pkg-Description: Common ToolKit for medical image analysis
 The Common Toolkit is a community effort to provide support code for medical
 image analysis, surgical navigation, and related projects.
 The goal of CTK are as follows:
 Provide a unified set of basic programming constructs that are useful for
 medical imaging applications development
 .
 Facilitate the exchange and combination of code and data
 .
 Document, integrate, and adapt successful solutions
 .
 Avoid the duplication of code and data
 .
 Continuously extend to new tasks within the scope of the toolkit (medical
 imaging) without burdening existing tasks
 .
 This is the CTK Core plugin development files

 ; Added by blends-inject 0.0.7. [now official package]
Depends: python-cfflib

Depends: libopenslide-dev

Depends: python-openslide

Depends: libopenslide-java

Depends: libbio-formats-java
Homepage: http://www.loci.wisc.edu/software/bio-formats
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bio-formats/trunk/
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/bio-formats/trunk/
License: GPLv3
Language: Java
Pkg-Description: a standalone Java library for reading and writing life sciences image file formats
 Bio-Formats is a standalone Java library for reading and writing life
 sciences image file formats. It is capable of parsing both pixels and
 metadata for a large number of formats, as well as writing to several
 formats.  The software includes a visualisation tool VisBio and it also
 works with ImageJ.
 .
 Currentla Bio-Formats supports 75 formats including the most very
 frequently used in biological and medical research.
Remark: This library would enhance the package imagej

